Glyma18g42375 - SoyBase

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Report for Sequence Feature Glyma18g42375

Feature Type:	gene_model
Chromosome:	Gm18
Start:	51370172
stop:	51397245
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g42375

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09100	AT	Annotation by Michelle Graham. TAIR10: mRNA capping enzyme family protein \| chr3:2788435-2792913 REVERSE LENGTH=672	SoyBase	E_val: 0	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006310	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA recombination	SoyBase	N/A	ISS
GO:0006370	GO-bp	Annotation by Michelle Graham. GO Biological Process: 7-methylguanosine mRNA capping	SoyBase	N/A	ISS
GO:0006397	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA processing	SoyBase	N/A	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0016311	GO-bp	Annotation by Michelle Graham. GO Biological Process: dephosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003910	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA ligase (ATP) activity	SoyBase	N/A	ISS
GO:0004484	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mRNA guanylyltransferase activity	SoyBase	N/A	ISS
GO:0004651	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polynucleotide 5'-phosphatase activity	SoyBase	N/A	ISS
GO:0004725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008138	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
KOG2386	KOG	mRNA capping enzyme, guanylyltransferase (alpha) subunit	JGI		ISS
PTHR10367	Panther	MRNA CAPPING ENZYME	JGI		ISS
PTHR10367:SF0	Panther	MRNA CAPPING ENZYME	JGI		ISS
PF00782	PFAM	Dual specificity phosphatase, catalytic domain	JGI		ISS
PF01331	PFAM	mRNA capping enzyme, catalytic domain	JGI		ISS
PF03919	PFAM	mRNA capping enzyme, C-terminal domain	JGI		ISS
UniRef100_G7JLW2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA-capping enzyme n=2 Tax=Medicago truncatula RepID=G7JLW2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F277	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F277 related cluster n=1 Tax=unknown RepID=UPI000233F277	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g42375

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g42375 not represented in the dataset	Glyma18g42375 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g42375

Paralog	Evidence	Comments
Glyma07g17420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g42375 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g196200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g42375

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g42375

Limit To All Plant Sequences

>Glyma18g42375.1   sequence type=CDS   gene model=Glyma18g42375   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGTTGCTGTGGATTTGAATGCCTCACCTGTGCCAGAGGACGATCAAGATGATTTTGGGGACCAGGTTGAAGAGTACCATGCTCCAGAAGAGCGTGTGGAATCTGCAGTTGATATTGCTCGCCGGGAACGTGAAGAAAGAAAAAGAAAGTTGAAAAGAGAACGTTCAGATGACAAACCTGTGCAAGTATCACAGTCACCTGGACATGATCAGTTATTTCATACTAAGATCCTTAAATCATATGATAGAAGTAAGCTTCCTCCAGGTTGGTTGGATTGCCCTTCATTTGGCCAGGAAATTTATTGCATGATACCATCGAAGGTTCCACTTGGTGAATCATTCAATGACTACATCATTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAGCTTGGTCTGGTAATTGATTTGACGAATACTTCTCGATACTATCCAGTAGCAGATTTAAAGAAAGAGGGTATCAAGCATGTTAAGATTCAATGCAAGGGCCGCAATTCTGTACCTGATAATTTATCTGTTAATCATTTTGTCTATGAGGTTACACAATTTCTATTTCGTCAAAAACACTCGAGGAAGTATATACTTGTTCATTGTACACATGGTCATAATCGGACAGGATACATGATCATCCATTATCTGATGCGCACAATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCTGATGTACGCCCTCCGGGAATCTATAAACCTGAGTACATTGATGCATTATATGCATTTTATCATGAAAAAAAGCCTGAAATGATAGTTTGTCCTCCTACCCCCAAGTGGAAGAGAACTCCTGAGCTTGTTGATCTCAATGGTGAAGCAATGCCAGATGATGACGATGATGATGGAGTGCCAGGCTCTCCTTTGCATGAGAATCATGAGACTGACACTATAATGACAAATGATGATGTTTTGGGTGATGAGATTCCTAATGATCAGCAAGATGCATTTCGTCAGTTCTGCTTTCAAACACTCAAACTAGGTGTTGGGGCCAGAGGGCACATGCAATTCCCAGGGTCACATCCAGTTTCTTTAAACAGGGAGAATTTACAACTGTTACGACAGCGTTATTATTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATGGACGGATGTTACTTGATTGATAGAAGCTTCAATTTTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGATTACAAATGATGGCATGGCTGAGAAGACCCACCACTTCACATTACTTGATGGGGAGATGATTATCGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTCATATATGATCTGATGGCAGTCAATGGAGTATCAGTAATAGAGCGACCATTTTATGAACGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCAGGAACGGTTCCAGAGCAGAAATCCTTACTATAGATATGACATGGAGCCATTCCGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTAAGCGAATTCATACCAAAACTCTCACATGATGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCTTACATACCTCGCACTCATGAAGGCCTCTTAAAGTGGAAATATGCTGATCTAAATTCAGTTGATTTTCTCTTTGAGATTGATAACGATTGTCAGCTGCTTTTTCTGTATGAACGTGGAAAAAAGAAACTCATGGAAGGGTACAGGGTTGCATTTGAAGAAGGTTCGAATCCCTTGCATTATTCTGGAAAGATCATTGAGTGTTCTTGGGATTCTGATAGACAGGAATGGATATTCAAGCGAATCAGAACAGATAAATCAACTCCAAATGACTTTAATACTTATAGAAAGGTGATGCGAAGTATAAGAGACAATATCACAGAGGATATCCTGTTGAATGAAATAAGTGAGATAATTCGCCTTCCCATGTATGCAGACAGGATAAGAATTGATAGCAAAGCCAATCACCACACCAACATGTCACGGCGAAGGTAA

Predicted protein sequences of Glyma18g42375

Limit To All Plant Sequences

>Glyma18g42375.1   sequence type=predicted peptide   gene model=Glyma18g42375   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVAVDLNASPVPEDDQDDFGDQVEEYHAPEERVESAVDIARREREERKRKLKRERSDDKPVQVSQSPGHDQLFHTKILKSYDRSKLPPGWLDCPSFGQEIYCMIPSKVPLGESFNDYIIPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVADLKKEGIKHVKIQCKGRNSVPDNLSVNHFVYEVTQFLFRQKHSRKYILVHCTHGHNRTGYMIIHYLMRTMSMSVTQAIKIFSDVRPPGIYKPEYIDALYAFYHEKKPEMIVCPPTPKWKRTPELVDLNGEAMPDDDDDDGVPGSPLHENHETDTIMTNDDVLGDEIPNDQQDAFRQFCFQTLKLGVGARGHMQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNFRRVQMRFPCRITNDGMAEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDLMAVNGVSVIERPFYERWKMLEKEVIEPRNQERFQSRNPYYRYDMEPFRVRRKDFWLLSTVTKLLSEFIPKLSHDADGLIFQGWDDPYIPRTHEGLLKWKYADLNSVDFLFEIDNDCQLLFLYERGKKKLMEGYRVAFEEGSNPLHYSGKIIECSWDSDRQEWIFKRIRTDKSTPNDFNTYRKVMRSIRDNITEDILLNEISEIIRLPMYADRIRIDSKANHHTNMSRRR*

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